rs29055537 SNP Detail

Summary

• ID
  rs29055537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60227153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC ACGTCTTCCA GAAAAATTCA
  Y
  GTCTTCCAGG AAAATCCATG TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38382359	NES09718164	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29055537					SNP	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382359	NES09718164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60227153 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	458 bp downstream
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	459 bp upstream
Tssr161077	transcription start site region 161077	288 bp downstream
Tssr161078	transcription start site region 161078	264 bp downstream
Tssr161079	transcription start site region 161079	232 bp downstream
Tssr161080	transcription start site region 161080	213 bp downstream
Tssr161081	transcription start site region 161081	81 bp downstream
Tssr161082	transcription start site region 161082	61 bp downstream
Tssr161083	transcription start site region 161083	5 bp upstream
Tssr161084	transcription start site region 161084	130 bp upstream
Tssr161085	transcription start site region 161085	258 bp upstream
Tssr161086	transcription start site region 161086	321 bp upstream
Tssr161087	transcription start site region 161087	343 bp upstream
Tssr161088	transcription start site region 161088	369 bp upstream
Tssr161089	transcription start site region 161089	392 bp upstream
Tssr161090	transcription start site region 161090	1861 bp upstream
Tssr161091	transcription start site region 161091	1970 bp upstream