rs29055539 SNP Detail

Summary

• ID
  rs29055539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60226430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTACTCAT CTGTAATTAA
  CAAGCCCAGT TTATAACAAG CTCAGTAAAG CTCAGTAAAA ATCTGTGATT TCATAATATA
  GCATTTCATT GGCCTTTTCT TTACCACCCA GCTTTTACAT TCATTTAACT CCTGTAATAT
  CTTTCTGTTA CCAGTTCTTC TCTGACCCAA GTCATTCAAC ATCCTCAAGA ACTTTCTTTT
  Y
  CCACATCAAA ATGCTCCATT ACTCTGAAAA CATGAATAAC TAGATCTTTT AGCATCTAGG
  TCTCTTTATC TCTAGGGTTA CCAGTATCAT TTATGTATAA TTCTTATACA TTATTTGGTT
  TTTAACAGGA CTATGGCAAT ATTCAGGCTT TTTGTTATCT CTCAATAGGT GGGTTTTTGA
  ATTTGTAATT TATAAATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38382361	NES09718162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29055539					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382361	NES09718162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60226430 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	1181 bp downstream
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	1182 bp upstream
Tssr161076	transcription start site region 161076	1696 bp downstream
Tssr161077	transcription start site region 161077	419 bp upstream
Tssr161078	transcription start site region 161078	437 bp upstream
Tssr161079	transcription start site region 161079	464 bp upstream
Tssr161080	transcription start site region 161080	498 bp upstream
Tssr161081	transcription start site region 161081	633 bp upstream
Tssr161082	transcription start site region 161082	651 bp upstream
Tssr161083	transcription start site region 161083	728 bp upstream
Tssr161084	transcription start site region 161084	853 bp upstream
Tssr161085	transcription start site region 161085	981 bp upstream
Tssr161086	transcription start site region 161086	1044 bp upstream
Tssr161087	transcription start site region 161087	1066 bp upstream
Tssr161088	transcription start site region 161088	1092 bp upstream
Tssr161089	transcription start site region 161089	1115 bp upstream