rs29060359 SNP Detail

Summary

• ID
  rs29060359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56439015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACATTGG AAGAATCTGT
  TAAGTAAGTG TTAAGTGAAA ACAGAACTTG ATGACATTAC AAAAATATCA TTCATATAGA
  ACGATTACTG AGTACCTACT TGATTTCTGT GCAAGTGAGA CCAGAGTCAG GTGCCTCGGG
  GTTAAGACTG TCAAACAAAA ATCCCTGACG ATAGTTGGGA GTGCTTACCC ACACATTTCA
  Y
  CCCAGTATTT GGGACGCTGA AGTAGGGCAG TTACGCGTTT CAGCACAGAC TGGCTTTGTT
  AGAGTCTGTC TCAAACACCA AACCAAACAA AAAAAAAAAA ATGCTACCAA GCATGCTTGA
  ACTTTAAGTG AGCATTCTTA ATTTGTTTTG TGTTTTGAGA CAGTACCAGT CAGGCTGAGA
  GTGGTCTTGG AATTCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38387871	NES09719012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29060359					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38387871	NES09719012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56439015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22733	CpG island 22733	694 bp distal
Rbmx	RNA binding motif protein, X chromosome	619 bp upstream
Rr8653	regulatory region 8653	within coordinates
Tssr163454	transcription start site region 163454	667 bp upstream
Tssr163455	transcription start site region 163455	615 bp upstream