rs29060361 SNP Detail

Summary

• ID
  rs29060361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56437948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCATTAA AAACCGCGTG
  TTAAAGACAA AATGGCGACA CTTGGAACGA ACCCAGAACC ACCAACAGCC TCCGGACGAA
  CTAACTTTTG CATTGACAGT TGCAGCGAAA ACTCAGAAAG CTTCCTCTCC TTGCCGCCAA
  GGACCAGAGG AAGCCTCAGA AGTCCACCAG CCTATCATTA GCACGGACGC TATTCTGGTG
  Y
  TACTCCCGCG GTCCCAGCAC GTCCCGCCCC ACCTACAAAG CTGCGCCCTC CGCCCTCCCG
  CGACAGGGGA CAGCCAAACC TCCGGGAGAC GCACTCAGAT AACTGACCCC ATAATGTGCT
  GCTTCCACCC CTTCTGCTTT AAATAGGTTG ACACCTTTGG GTGTCTTAAA ATGGCGCCCG
  CCGCCACTAT CTCCCGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38387874	NES09719009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29060361					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38387874	NES09719009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56437948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22733	CpG island 22733	within coordinates
Rbmx	RNA binding motif protein, X chromosome	within coordinates
Rr8653	regulatory region 8653	within coordinates
Snord61	small nucleolar RNA, C/D box 61	1079 bp upstream
Tssr163454	transcription start site region 163454	383 bp downstream
Tssr163455	transcription start site region 163455	441 bp downstream