rs29062265 SNP Detail

Summary

• ID
  rs29062265
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55572065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCCTA AAGGCAAAAC
  TAAAACTGAA GTGTCAGAAG GTACCTCCAT GTTTACACTG AGTTGGCCGG GTCAGGATTA
  TTATGGCAAC AAGATCATGA CAGCTGGCAG CAGGAGCTCA TCACTCTGCT CCCACGTTTA
  GACCTCATGG GAAGTGGTAC AATGAAGAGT ATCTTGAGAG TCAATACCAC ATTTCTAAGA
  S
  CACAAGTGGT TTTCTCATAA TACAGAGGAT GGGAGTTAAA TCACAGCCCA AAGCTGGAGG
  GGTGACTGGG TGGTTAAGAG CACTTGCTGC TCTTCTCAAG AACCCTAGTT CAGTTCCCAA
  TGCCCATGTC AGATAGCTCA CAACCACTCA AAATTCCATT GCCACAGGAT TTCCCTCCCT
  TCTTCTGGCC TGCATGAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389747	NES09718259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29062265					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389747	NES09718259	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55572065 () rs orientation: forward

Symbol	Name	Function Class
Gm10477	predicted gene 10477	1273 bp downstream
Gm62070	predicted gene, 62070	966 bp downstream