rs29062268 SNP Detail

Summary

• ID
  rs29062268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55571301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCTGTG TCCGCTCTCA
  TATTTAGAAC CGTCTTCTTT CTCAATCATT TCCTATTCCT ATTCCCGAGA GATATCCTCT
  CAATAGGCCG TGATGATGGC TTAATGGGAT GTTTTTACCT TCTTTACTGA ACATGTGGGC
  TGAGCCATTG CACGTCTTGT GTGAATCATC TCTAATCACG AAGCTTCACA GTCCTCTTTA
  Y
  CTCGTTCTAC AGTCACATTC AGTTTTATTT GAAAACAAAA AACAAAAAAA GTTTTCATCA
  CTCCATAATT TACAGTAATA CAGTTGTGCC TATGATTAAG ATAGATTGAT TGGGCTCAGA
  TGACAAAACG TTTAGATGAC ATGTGCAATT TCCAGTTCAG TGTAGACTTC TTTTTTTTTT
  TTTTAATAGA ATCACACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389750	NES09718289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29062268					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389750	NES09718289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55571301 () rs orientation: forward

Symbol	Name	Function Class
Gm10477	predicted gene 10477	509 bp downstream
Gm62070	predicted gene, 62070	202 bp downstream