rs29062269 SNP Detail

Summary

• ID
  rs29062269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55571253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCATAAA GTAAGTAAAC
  ATCAGGAGAA CCCTGTATTC TGCAGCAGGT CACCTGTGTC CGCTCTCATA TTTAGAACCG
  TCTTCTTTCT CAATCATTTC CTATTCCTAT TCCCGAGAGA TATCCTCTCA ATAGGCCGTG
  ATGATGGCTT AATGGGATGT TTTTACCTTC TTTACTGAAC ATGTGGGCTG AGCCATTGCA
  Y
  GTCTTGTGTG AATCATCTCT AATCACGAAG CTTCACAGTC CTCTTTATCT CGTTCTACAG
  TCACATTCAG TTTTATTTGA AAACAAAAAA CAAAAAAAGT TTTCATCACT CCATAATTTA
  CAGTAATACA GTTGTGCCTA TGATTAAGAT AGATTGATTG GGCTCAGATG ACAAAACGTT
  TAGATGACAT GTGCAATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389751	NES09718287	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29062269					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389751	NES09718287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55571253 () rs orientation: forward

Symbol	Name	Function Class
Gm10477	predicted gene 10477	461 bp downstream
Gm62070	predicted gene, 62070	154 bp downstream