rs29062824 SNP Detail

Summary

• ID
  rs29062824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55595296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACGTCA TCCTCCGGCC
  TCCACAAGCA CAGGCATGCA TAGGTGAGTG CACCCGCCTA AAAATGTGCA ATCATCAAAA
  ATGTGCAGAA TTGAGAAATC TCAAAACAAA GCAAAAACAA AAAACAAAAA CAAAATCCAA
  CTGTGTCTGG TCTCCAAGAC ACTTATCTCA GAGTCAAAGA TTAAAAGATG AAAAGGCAAC
  R
  TAAGGAATAT TTTACATTCC CAGACAAACA GAGTCTCAGA GGAAGCAAGG ACACACCTGT
  GCTCCTATCT GAAAAACAAG CTGACTTCAA GATGAAAACT GTAAAACAAT ATAAAGAAAG
  TGACCACACC TTAATAAATA GAACGATTTT TCCAAATGAG GAAACAGTTG TAAATACAGC
  AAATGTTGGA GTGTACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38389687	NES09717648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29062824					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389687	NES09717648	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55595296 () rs orientation: forward

Symbol	Name	Function Class
Ct45a	cancer/testis antigen 45	330 bp upstream
Tssr163412	transcription start site region 163412	392 bp upstream
Tssr163413	transcription start site region 163413	331 bp upstream
Tssr163414	transcription start site region 163414	314 bp upstream
Tssr163415	transcription start site region 163415	257 bp upstream
Tssr163416	transcription start site region 163416	233 bp upstream
Tssr163417	transcription start site region 163417	219 bp upstream