rs29062825 SNP Detail

Summary

• ID
  rs29062825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55594526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGGGTG GGAAGGAGGT
  ATAGGATGTA GAACAGTCGT GGGGGGGGAG TTGGAACAAA ATCTGGAATG TAAAAATAAA
  TAAATAAATA AGAAAATATG CAAAGTTTAC AGAAACTCAA AAAAAGAAAG AAAGAGAGAG
  AGAGAGAGAG AAGGAGAGAA AGAAAAGAAA GTCAGCCAGT GCTGACCAAG ATGACTGTAC
  S
  CAGTAGATTT ACCTTTTAAA ATTAGAGGAG AAAGAAAATC TTCTCATGAT AAGCTTGAAG
  TAAAACAATT CATCATGAGA GAAGACACTA AAGAAGGAAT ACTACACACA GAAGATGGAG
  ATCCACAGCA ACATGAGAGC TTGGGGAATT AAAAACATCA CTAGAAAATA GAGAGACAAA
  CAGAAATTCG AAAAAGGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38389688	NES09717687	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29062825					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389688	NES09717687	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55594526 () rs orientation: forward

Symbol	Name	Function Class
Ct45a	cancer/testis antigen 45	within coordinates
Tssr163412	transcription start site region 163412	349 bp downstream
Tssr163413	transcription start site region 163413	430 bp downstream
Tssr163414	transcription start site region 163414	453 bp downstream
Tssr163415	transcription start site region 163415	509 bp downstream
Tssr163416	transcription start site region 163416	526 bp downstream
Tssr163417	transcription start site region 163417	544 bp downstream