rs29065431 SNP Detail

Summary

• ID
  rs29065431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84619874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATAAA TGTTTTGTTT
  ACTCTGATCT TGAATTATAT TTATAATTGT ACTACTAAAG TAAATAGCAA GTGTTCACAG
  GGGCCTTGGG TTGTGATAGT GTCCACAGGT CCTTCTTAGA CCTCAGAACA GTACTTGTTA
  GGCAATTTTG CTGTTCTTCT TTACATTTAG TCCCAAAGTT TTAGAGTTAG ATTGCATTTT
  R
  CAAAATATAC GGCCAATATT AGGGCAAGCA GCAGCATCTC TTATGGGCCT AGGGGTGGAC
  AGATTTTAGA TCTTCCAGAG CAGCGAGTTT CCGAGCCTTT AGTGAAGTCA CAGGGACACT
  TTGCAGAGGT GTTAGGTTGG GAAAGGCATG GCTTTTGGCT CCCACTGCTC TCTGCTGTTG
  GGTCTCTTGA CGTGCTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38394723	NES09680769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29065431					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38394723	NES09680769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84619874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	1705 bp distal
Rr692278	regulatory region 692278	1393 bp distal
Rr692279	regulatory region 692279	within coordinates
Tab3	TGF-beta activated kinase 1/MAP3K7 binding protein 3	within coordinates