rs29065433 SNP Detail

Summary

• ID
  rs29065433
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84619782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATGTGT AAAGATTCTA
  AATAGTTAGC AGTGACCTAT ACCTGAAATT CATGGTTTTG GTAACTTCAC CTTAGTGTAC
  CCAAGATACT TCAAAGAATA AATGTTTTGT TTACTCTGAT CTTGAATTAT ATTTATAATT
  GTACTACTAA AGTAAATAGC AAGTGTTCAC AGGGGCCTTG GGTTGTGATA GTGTCCACAG
  K
  TCCTTCTTAG ACCTCAGAAC AGTACTTGTT AGGCAATTTT GCTGTTCTTC TTTACATTTA
  GTCCCAAAGT TTTAGAGTTA GATTGCATTT TGCAAAATAT ACGGCCAATA TTAGGGCAAG
  CAGCAGCATC TCTTATGGGC CTAGGGGTGG ACAGATTTTA GATCTTCCAG AGCAGCGAGT
  TTCCGAGCCT TTAGTGAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38394725	NES09680767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29065433					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38394725	NES09680767	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84619782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	1613 bp distal
Rr692278	regulatory region 692278	1301 bp distal
Rr692279	regulatory region 692279	within coordinates
Tab3	TGF-beta activated kinase 1/MAP3K7 binding protein 3	within coordinates