rs29065897 SNP Detail

Summary

• ID
  rs29065897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84618919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTACTT TGTTAGTGGG
  TGGGGGTCGG GGGCTTACTT TTTGCTTTAT GAGTGATTTA TAGGACTATA AAAGAACACA
  CTTAGAAAGG ACGCATGGTT GAGAAGTTTT TGGATTTTTT TAAATGGAGA TTTAACTATA
  ATATTCAATT ACAAAGTACA CTATCTTCTA TGGTAACTTT TCTCAATGAA CACTGGAAGT
  S
  AGCAAGCACG TCTTCAATTC TACATATACG TAATTTGTAA TCAGTGGGTT ATGTAATTTT
  TACAAACGTA CAGTCCCCCT CCCCTTTCTC CTAGAACTTG TTTAATCAAG ACAAAGTTGG
  CTTTAGGGAA GGTAGATAAT AAATATATGA TTCCTGACGT TACATCTGAC AAGGCATAAT
  GAATGTCCAG TCGCCCTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38394729	NES09680807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29065897					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38394729	NES09680807	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84618919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	750 bp distal
Rr395312	regulatory region 395312	1203 bp downstream
Rr692277	regulatory region 692277	1281 bp distal
Rr692278	regulatory region 692278	438 bp distal
Rr692279	regulatory region 692279	810 bp proximal
Tab3	TGF-beta activated kinase 1/MAP3K7 binding protein 3	within coordinates
Tssr161439	transcription start site region 161439	1296 bp downstream
Tssr161440	transcription start site region 161440	1274 bp downstream