rs29065898 SNP Detail

Summary

• ID
  rs29065898
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84618880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCAGTG TAAAAGAACA
  ACTTGATGAA CCCGGCTTGC TCTGTACTTT GTTAGTGGGT GGGGGTCGGG GGCTTACTTT
  TTGCTTTATG AGTGATTTAT AGGACTATAA AAGAACACAC TTAGAAAGGA CGCATGGTTG
  AGAAGTTTTT GGATTTTTTT AAATGGAGAT TTAACTATAA TATTCAATTA CAAAGTACAC
  W
  ATCTTCTATG GTAACTTTTC TCAATGAACA CTGGAAGTCA GCAAGCACGT CTTCAATTCT
  ACATATACGT AATTTGTAAT CAGTGGGTTA TGTAATTTTT ACAAACGTAC AGTCCCCCTC
  CCCTTTCTCC TAGAACTTGT TTAATCAAGA CAAAGTTGGC TTTAGGGAAG GTAGATAATA
  AATATATGAT TCCTGACGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38394730	NES09680806	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29065898					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38394730	NES09680806	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84618880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	711 bp distal
Rr395312	regulatory region 395312	1164 bp downstream
Rr692277	regulatory region 692277	1242 bp distal
Rr692278	regulatory region 692278	399 bp distal
Rr692279	regulatory region 692279	849 bp proximal
Tab3	TGF-beta activated kinase 1/MAP3K7 binding protein 3	within coordinates
Tssr161439	transcription start site region 161439	1257 bp downstream
Tssr161440	transcription start site region 161440	1235 bp downstream