rs29069708 SNP Detail

Summary

• ID
  rs29069708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84092339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGGTGC GTCCCTGGGG CTTCCACCCC GGCGCCAGTG
  CTTGCCAGCC AGCTCCTTCC TGGCTGCTGG GACGGCTCGG AGAGCTAAAG CGGATTTCTC
  R
  CTTTGCCCAG AGAGGGACAG CTGGTTTCCT CCTGCGGGGA TCGGGCCCGG GGAGCTTTTT
  GCTCCTTTGT GGGGCTCCCA GTTTGGACAG GAACCAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38395730	NES09678027	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G		G	G	G	G	G	G	G
ss46473157	mCV22789597	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss134233989	ENSMUSSNP257053	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29069708					SNP	A	A	A	A	A	G	A	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38395730	NES09678027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84092339 () rs orientation: forward

Symbol	Name	Function Class
Dmd	dystrophin, muscular dystrophy	within coordinates
Rr692261	regulatory region 692261	310 bp distal
Rr692262	regulatory region 692262	within coordinates
Tssr161429	transcription start site region 161429	426 bp downstream
Tssr161430	transcription start site region 161430	400 bp downstream