rs29070897 SNP Detail

Summary

• ID
  rs29070897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93280142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCGTGTG TGTTTTTTAA
  TTTCAGTGTT TGCTTTTCGT ATCTACAGAA CAGGATGACT GAATACTTCT AATCATTTGA
  AAATGGTTTT TCAAGAGCTT ACACATGCAT CCATGTTTCT CTAATGCTCA GTAGATCCAG
  CAATGTACAG GGAATTTCAA CTTGTTAGCA CTTCATGCAA TATTTGAGGA ATTCAGTTCT
  Y
  GTTTTTAATC ACAGCACTTA GTAGGTGCTT TGAGTCCCAT TTCATCAGTG GTAAAGGATG
  TTAATACTCT TTACTACCTG TTAATTGGCA AGAAATAAGA TAGTAAATAT TTGTGGCTCG
  AAAATAGAAT TTACTTTCTA GAGTTTCAAA ACTGTAGAAT GTTTTGGCTT ATAATAGTCA
  ATTAAAAGCG AAAGGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38399229	NES09679289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29070897					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38399229	NES09679289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93280142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22832	CpG island 22832	1003 bp distal
Klhl15	kelch-like 15	within coordinates
Rr692438	regulatory region 692438	715 bp distal
Rr692439	regulatory region 692439	1857 bp distal
Rr692440	regulatory region 692440	1405 bp distal
Tssr161485	transcription start site region 161485	1932 bp downstream
Tssr161486	transcription start site region 161486	1564 bp downstream
Tssr161487	transcription start site region 161487	1539 bp downstream