rs29071369 SNP Detail

Summary

• ID
  rs29071369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93255601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TAAAGCCCCC CCCCCCCCCC CCCCCCCCGC CGGCAACATG
  CTGTTAAGAC TGGGAAGACT ATAATGACTA TAGTGTCATT GTCACACTAA GACAAGTCCA
  Y
  TCACTAAGAG AGGTCTGGCG ATGAAAGGCC ACCAAATACT GGAGTCATAA CAAGTCCTCA
  AATGTCTAAC ACAGTGAACA GTATAGTCCA ATTTCCAATC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38399241	NES09679970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	C	C
ss134247200	ENSMUSSNP4010679	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29071369					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38399241	NES09679970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93255601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	495 bp proximal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	within coordinates
Rr395367	regulatory region 395367	113 bp upstream
Rr692435	regulatory region 692435	646 bp proximal
Rr692436	regulatory region 692436	1233 bp proximal
Rr692437	regulatory region 692437	1759 bp proximal
Tssr163780	transcription start site region 163780	643 bp downstream
Tssr163781	transcription start site region 163781	690 bp downstream
Tssr163782	transcription start site region 163782	910 bp downstream