rs29071817 SNP Detail

Summary

• ID
  rs29071817
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93066567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACGTTT ACCCTGACTA
  ATGCTGACTA CTGGGGAACT GCTCCAGTCC CAAGCACTTT AGTTCTCTGC AGTGACTTTG
  TTTTCTTGTC TTCGCTCCCA GGGTCCAAAG AGAGGAGCTG TGGCTTCCAT TTGCTGGCTG
  GACTTCCAGA GCGCCTTTCT TTGCCCTTCC TAGAATCAGT CAGACTCTCT TGGCACTCCC
  M
  ACAGGTGACT CTCACTAGCT TTCCGGGAGT GCCATCTGCA GACTGAGTGA GTCCTGAAAG
  TCTAGGTGAA GGCCACCAAA GGGAGGCCAC TGGTCAAACA GCATTGGGGG TGGGGTGGGG
  GCAGTGGATG GAATACTGTG AGTCAAGGTC GAATTTGAAA CATTGGAGGT GCAGGGAGGA
  TGGCACAGAC ATTTGGAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38399449	NES09684718	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29071817					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38399449	NES09684718	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93066567 () rs orientation: forward

Symbol	Name	Function Class
Gm6987	predicted pseudogene 6987	899 bp upstream
Rr692410	regulatory region 692410	131 bp distal
Tssr161483	transcription start site region 161483	851 bp upstream