rs29072477 SNP Detail

Summary

• ID
  rs29072477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:92420029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTAGCAT GAAAGAACAG
  GATTGCCATC CTACCATGGC AAAGCAGTAG CACGTTCTAA CTTAACAAAG CATTAGGAAA
  TGTGCCTGCA TCCTCACTCA TTCAGCAACA TATGTTGACT GCTGCTGTTC CTAGCTTTCG
  AGTTACTATG TATGTCCTTT TAAAGACTTG TGTCTCATCC TGTGTGAAGG GAAAGACACA
  Y
  GCACCAAATT CAACAAGTAA CAGGAGAATT ATTTAGTGAT GGCACTCAAA TGCAATTCTA
  CTTACTTTAA GCCACCTATT CTAGAAATGT TCTTTCCATG CTCCCGTGGA GCCAGATACC
  CATGATACCC TCCAGCTGGA GAACAATCAG CTTATATCTT GGCTGGGGGT GGGGGTGTCC
  TACCAAGGCC AAACAATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38400360	NES09685021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29072477					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38400360	NES09685021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92420029 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pola1	polymerase (DNA directed), alpha 1			Intron
				Noncoding-Transcript-Variant
Rr692369	regulatory region 692369			987 bp proximal