rs29072622 SNP Detail

Summary

• ID
  rs29072622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92708825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCTATT TCCTCGGAAG
  ACTACTTTAT GGATGACTCA GAAGCACAGA GTAGCTGTGA ATGCCTCTCT GTCGCGCATG
  CTCAGTGCCT AGATTTAATC ATTCATTAGG GGTCAGGAAG CAGATAGGGG GAAGAGGCAG
  AGCAGATGCA TTGCCTTCTT CAGTAGCCAT TTTAAGAAGA GACTAATTGA TGACTCAAGC
  Y
  AACAGTTTGG AAGGAAAAGG TTTGTACCAG AAAACATAAG ATTAATACTT GATCCTTTTT
  CTAGCTCCCA ATTTTCAAAA TAGTTAGCAC CCTCCAATAC AGACAAGTAA AGGTTTTGGT
  TGTTTTGTTT CATTCCAGAC AGGGTCTGAT ATATCTATCC CAAGGTAGCT GCAAACACAC
  AATGTAGTTG AGGATAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38400074	NES09678460	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29072622					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38400074	NES09678460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92708825 () rs orientation: forward

Symbol	Name	Function Class
Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	within coordinates
Rr10134	regulatory region 10134	within coordinates
Rr395360	regulatory region 395360	63 bp downstream