rs29072769 SNP Detail

Summary

• ID
  rs29072769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92307317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTACCAA ATATCTCCTT
  ATCCTTCAGC CTCTAACAAG CTTTGATGGA TGACCTCCAT AGCACCTTTT CGATGCTTTC
  TTCTCCATCT CCCCACAGTG GTCCATTCAA GCACCATTTT CATCCTAGAC TCTGCACTAG
  CTTCTTTGCT GATGTCATCA CATGCACATT TTGACCTTTC TAGTTGTTTT CTTGGCTCAC
  Y
  GTTTTTCAAC AGATTCTCGT TATTTTGTAT CCTTAATCAG GTTCTGAAGT TCTTCTAGTA
  TCTCTTCCCT GAACTTGGTC AAACTGGCCC TCTCTCAGTT CTGTGAAGAA TATAGCAATT
  TTTCCTGCTT CAAAACCCTT AGACAACCTT CTCTCTCTAC CTAATACTTG CCCACCATGC
  CCACCAACAT AATACAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38400461	NES09686807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29072769					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38400461	NES09686807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92307317 () rs orientation: forward

Symbol	Name	Function Class
DXMit128	DNA segment, Chr X, Massachusetts Institute of Technology 128	559 bp distal
Gm61792	predicted gene, 61792	within coordinates