rs29073072 SNP Detail

Summary

• ID
  rs29073072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92706101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACATTA ATCATTTATT
  GATTAGGGCA GTGCTCAGTG TTCTGCCTTG TCTTATTTTC ATTAGGCAAG CACACCTACA
  TTGTCTACAG TTTCTGGTTT TCTTTAATTC TAACTGGAAT GACAGCTTAA GATACTTCCA
  AAATATTCTG AGTACAGAAT CACTAGATAA GACTTTCGAA TTTTGTTCCC TGGCTTTTAC
  W
  GTGGTCTTGG CCTTATCAAG CCATTCAATG GCAATTTTCA GGGTCATAAA ACTATATCTT
  ACCAATTTAG TTTAAAATAA CTCTCTTGGG CTGGAGAGAT AGCTCAGTGG TTAAGAGCAC
  CAACTGCTCT TCCAAAGGTC CTGAGTTCAA ATCCCAGCAA CCACATGGTG GCTCACAACC
  ATCCGTAATG AGATCTGACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38400084	NES09678540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29073072					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38400084	NES09678540	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92706101 () rs orientation: forward

Symbol	Name	Function Class
Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	within coordinates
Rr4930	regulatory region 4930	100 bp proximal
Rr10134	regulatory region 10134	1500 bp proximal
Rr395360	regulatory region 395360	840 bp upstream