rs29074493 SNP Detail

Summary

• ID
  rs29074493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTGGA ACAATTGCGA
  GGGAGACATG GTGGTCATGG TGGTGGTGGG GTGAGGCTGA GTGGAGACAC TGGAGCTGCA
  GAGTGAGGAA GTTGCAAAGG GCTCAGGCTC GAAGTGGCCA GTGGGGGTTG GAGGGGGTCA
  GTCAAGCACC TGTTCAGTTC AAGCATTGTT GAAGCAGGAA ACCATGGCGA CTCTGGTTGA
  R
  AACGTCTGGT CTCCTTGTAG ATTAAAAGGT TGGCTTCAGC CGGGTGTGGT GGCACACGTC
  TTTAATCCCA GCACTCTGGA GGCAGAGGCA GGCAGATTTC TGAGTTTGAG GCCAGCTTGG
  TTTATAAAGT GAGTTCCAGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCAAAAAAAC
  CAAAACCAAC CAACCAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38402625	NES09680586	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29074493					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38402625	NES09680586	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788831 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	163 bp upstream
Tssr161463	transcription start site region 161463	514 bp downstream
Tssr161464	transcription start site region 161464	495 bp downstream
Tssr161465	transcription start site region 161465	471 bp downstream
Tssr161466	transcription start site region 161466	442 bp downstream
Tssr161467	transcription start site region 161467	353 bp downstream
Tssr161468	transcription start site region 161468	282 bp downstream
Tssr163758	transcription start site region 163758	505 bp upstream
Tssr163759	transcription start site region 163759	391 bp upstream
Tssr163760	transcription start site region 163760	240 bp upstream
Tssr163761	transcription start site region 163761	6 bp downstream