rs29074955 SNP Detail

Summary

• ID
  rs29074955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCACGGTC TGGTTTCTTT ATATCCTGCA GGAAGATTTG
  GCCACCTTGT TGGTTCTGCA GCTTTATCAG TTTCTCATCA TGCTCCCTCT CCTCATGAGA
  Y
  TGGTGGAGAA AGTATTTTGG AAAGTTCTTC AGAGCCACAT CATCTCTGTC AAAATAGCAA
  GACATAGACA GACAGATGTA GGAGGCATAC AACTCCAGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38402627	NES09680582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29074955					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38402627	NES09680582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788491 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	within coordinates
Tssr161463	transcription start site region 161463	174 bp downstream
Tssr161464	transcription start site region 161464	155 bp downstream
Tssr161465	transcription start site region 161465	131 bp downstream
Tssr161466	transcription start site region 161466	102 bp downstream
Tssr161467	transcription start site region 161467	13 bp downstream
Tssr161468	transcription start site region 161468	45 bp upstream
Tssr163758	transcription start site region 163758	165 bp upstream
Tssr163759	transcription start site region 163759	51 bp upstream
Tssr163760	transcription start site region 163760	84 bp downstream
Tssr163761	transcription start site region 163761	346 bp downstream