rs29074960 SNP Detail

Summary

• ID
  rs29074960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89787456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAGAAAA AAATGAGGGA
  ACCAAATAAA GAGAAAAATT ACCTCTACTT GACCGAATTG CACTTAAATG GTTTGTTCCT
  TTAGAGAAAT ATTAAGTTTC AGTGAGAACT AAGCTCACAT AAAAAACATC CCAGAGTTAG
  ATCAATCTGT CCAACTTGTG TAAATAGTAT TCATGCATGG GCATGTAGTT AGTTTGGGAA
  R
  ACAAAATATC TATTGAAGAG CAAATTTCAC AGAAATAATT TGCAGGTTTA TCCAAAGCAA
  TTGACTTCGA CATAATTATT ACGAGAATTT ATTGTAAACA TACTTAGAAC AATTTTATAT
  TTTATCTAGA AAATCTGTAC ACCACAACCA TGCTATAATT AGAGCAAAAT GTTAATATTA
  AGTGAAATTG TTCTAATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38402633	NES09680573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29074960					SNP	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38402633	NES09680573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89787456 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	696 bp downstream
Tssr161463	transcription start site region 161463	808 bp upstream
Tssr161464	transcription start site region 161464	870 bp upstream
Tssr161465	transcription start site region 161465	885 bp upstream
Tssr161466	transcription start site region 161466	920 bp upstream
Tssr161467	transcription start site region 161467	1007 bp upstream
Tssr161468	transcription start site region 161468	1080 bp upstream
Tssr163758	transcription start site region 163758	835 bp downstream
Tssr163759	transcription start site region 163759	948 bp downstream
Tssr163760	transcription start site region 163760	1119 bp downstream
Tssr163761	transcription start site region 163761	1381 bp downstream