rs29076582 SNP Detail

Summary

• ID
  rs29076582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:104806672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAGGAT GTGAGCACAG
  GGTGCACGTG GAGCCTTAGA GTAGGGCCTC AAATTGCACT GAGTTGTGGG GAGGCTTGTT
  TACTCATTTT ATGGTAACCC TGAATTTGAA CTTGTGGCTC GGTGGGGTCT CCAGCAGGAG
  GCGCAGTAAA GGCGCCGAAG GGTAGGATTG GGGGTTCAGT CACTACCAGA ACCTGGGAAG
  R
  CGGCCAGCGC CTGCTGCGTG TGAAAACTGC AAGCAACAAC GCCATTTAAT AAGGAAGAAG
  GAGGCGAGCG CCAGAGGCCC AGAGGGACCG TGGGGTTCAG GTGCGGGGCA GAGATGCAGG
  GGCTTGCGGC AGGCAGGCAC CTGCTCGCCA GGTCCTCTCC ACCCAGCCTC TCTTTCTGGC
  AGCCGCCAGT TCCCACCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38405165	NES09663518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29076582					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38405165	NES09663518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:104806672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22903	CpG island 22903	824 bp proximal
Cpgi22904	CpG island 22904	1166 bp proximal
Fgf16	fibroblast growth factor 16	1213 bp upstream
Rr2509	regulatory region 2509	72 bp distal
Rr8194	regulatory region 8194	within coordinates
Tssr161753	transcription start site region 161753	1196 bp upstream