rs29078727 SNP Detail

Summary

• ID
  rs29078727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:104846554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAGAGG TGAAAGTGAC
  AGGGGGTAAA TTGGTCCCAG TTGGTATGTT GAAACGCATG GTCAGTCCCT AAAACAAAAA
  CAAAAACAAA AAAAAAACAA AAAAAAAATG TACTTTTCAC ATTGTGATTA AAGACTTGAA
  TACTGCATCA CCTACTGTTT GGTAAAGAAT CTACTTTCTC AGAATAGGAA ATTATTAACA
  Y
  TCTTCCACAC ACAAACAAAA CACCCTTTTT ACCCGAAACC AAGATCTTAT TACATGTAAA
  GGTTTAACCC CTAAAGGTGT ATTCTTTTTT TTTTCCTAGT AATTCCCACA CACTGAGGGA
  ACTCAGTGAA TTCTGATGAG ATCCTAACAT CATATTAACA TTAAAGAAGT TTGGTACAGT
  GAGTTAGGGG TTTGCATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38405099	NES09662913	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29078727					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38405099	NES09662913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:104846554 () rs orientation: forward

Symbol	Name	Function Class
Atrx	ATRX, chromatin remodeler	within coordinates