rs29078798 SNP Detail

Summary

• ID
  rs29078798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103305537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACCAAA GTATTGAGGA
  ACAAAATTAC ACATTTCTAA TTTTTTTTCA AAACAATCGA TATCTTTAAA GTGCACTTAT
  GTTATTGCTT TCCATTAGCA AAGTCCATAA AGAAACCTAG CAGCCTAACC TTCCCTCTGC
  CCCAGAGACC TTGAGCCACA AGTGGCCCTG CCAGATGATA GTGGCCATGG TTTGAGCTTG
  R
  CAGAGCTGGA GAACAGAATG CTGAAACACA ACAAAAGAGG AAAATGTCTT TGATTTCAAC
  TGTGGCATTA ACTAAAAGAA TCCCAAAAGG ATCGAAGCAT GCAGCTCTGC CAGCTAGGCT
  GGGCAAAACA GGGGACACGG GTGACCGTGG AGGCTGACTC CAAGACTCCT GGGAAGTGGA
  CCTGTTTGGA AAGCTGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38406849	NES09667503	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs29078798					SNP	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406849	NES09667503	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103305537 () rs orientation: forward

Symbol	Name	Function Class
Rr10272	regulatory region 10272	417 bp proximal
Rr10273	regulatory region 10273	1025 bp proximal
Rr395465	regulatory region 395465	423 bp downstream