rs29078800 SNP Detail

Summary

• ID
  rs29078800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103304830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCACCAT ACTCATTCAT
  ATGGTGATTT TAAGCATTGT AAATGAACCT TATAATGGAG CATTTAGAGA CTATTATGAT
  TAAAATAAGA AGAAAAACCT ATTTTGGGAC GTCTTATTAG GGGATTTCTT ATTTCAATGG
  CATGACTTTT AAAAAGAAAT CCTTACAATA TATTACAGTA TCAGTATATG TACAAAACAC
  R
  TTTCGTATAA TGAACAACAT ACAGCATGGT CCATTGCCAG TAAGCCATCA TATGTGTTAG
  CCATAATCTC TCCATTCTCT CAAAACACAC TCTAACCCAA ACCCCAGTCA GAGGCAAGCA
  CTAAGCTCTC TTCCAACTCC ATAGATCTGT ATATCATAGA ATTTCAGAAG AATACAGCAT
  GTGGGCTTTT GTGCCTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38406851	NES09667537	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs29078800					SNP	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406851	NES09667537	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103304830 () rs orientation: forward

Symbol	Name	Function Class
Rr8958	regulatory region 8958	1777 bp distal
Rr10272	regulatory region 10272	1124 bp proximal
Rr10273	regulatory region 10273	1732 bp proximal
Rr395465	regulatory region 395465	within coordinates