rs29078843 SNP Detail

Summary

• ID
  rs29078843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103862953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACCACAA AGATAATTAG
  ATGAAAGGTA GTAGGAGAAG TAATGTATTC AGTGAGTAGA ACATCTAAAA TTAACTTCAA
  AAAAGATTAA TAATGGAAAC CTGGGTTTTA TTCCAGAGCT CATCCAGAGA GCTGTTTAGA
  CTTATGCTGT AAATATCTTT AAGTGGCACA GTAAGACAGT AAATACCAAT AGACTGATCT
  Y
  TCATATTGTA GGTTGAATGT GTCCAGTGCT AAGTTTCTGT GTTATATGTT CTTCCAACAT
  TATGTGATAG CATCTAATTG CAGTATTTCT CTGAAGTTTA TATTAAGCTG TTCAATTTTA
  GCTTGCAGGG CTGTGATAAA GAGATTGGCT ATTGTCAAGT CAGGAGACTG GTGAAAATGA
  AAATATTAGT TTGTATAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38406305	NES09660000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29078843					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406305	NES09660000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103862953 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	within coordinates
Rr6331	regulatory region 6331	1989 bp distal