rs29079079 SNP Detail

Summary

• ID
  rs29079079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103861945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTATACC TCATTCTCAT
  GGTGAAGAGG GAGGTACAGG AACCTTTTGG GGAACAGATT ATCATGAATG TATGTCTGAG
  TTTGCCCACA TTCCTAACCC TGTTGTTGAA CCTGCTGTGC CCATTGGCAT CTCAAGTCCT
  AGTAAGGCAC CTGGCCTTTG TGTTTACAAG ATTGCTAAGC AGGGAAGATT AGGCACTGCT
  M
  TTTTAGAAGA CCCAAATATG GATCTCAGAG TTCTGACTTC CTGTTATAGC TTCTAGAGTC
  TAGAGGGAAA GAAATGCTGC ATACAGTCAC ACACACACAC ACACACACAC ACACACAGAG
  AGAGAGAGAG AGACATACAC ACACACAGAG AACAGAGAGA CAGACACACA CACACACACA
  CAGAGAAAGA TACACACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38406311	NES09660081	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29079079					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406311	NES09660081	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103861945 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	within coordinates
Rr6331	regulatory region 6331	981 bp distal