rs29079083 SNP Detail

Summary

• ID
  rs29079083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103861616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTACATGCCT AAGCCCCCCA AGTTTCCTGC TGCCTTTCAT TTCATTTACC GGGTAGAGCT
  CTTGCAGAAT TGCCATAGCA ACAGGCCATT GGGCAGATTA AGCCATTATG GGTCTGGACA
  CTGACACTCA GAACTGATTA CCGGTCTGGA AACTTGAATG GCTGAACAAG AACCCTGGAA
  TTCGGACAAG GTGGCTCTTA GCCGGAGAGA AGGGGCAGTT CCACAACAGC ACAGGACTTT
  GTTCAAATCC TGACCCCCGA CTTCATCTTC TCCCCTGCTT GCTTCAGCAG AGATGAAGAA
  Y
  GAGACAGCAG GAGTTGTAGG TGGGAAGCCT GCTATTAAGC ATGAGCGCCT GAGTTTTGAT
  GACATATCTC TACTCTTTGA ATAGCCTCTG CTCAGTGTCA ACATCTCACT TCTGAGCATG
  ATCTCCCTTG ACTATACCTC ATTACTCATG GTGAAGAGGG AGGTACAGGA ACTTTTGGGG
  AACAGATTAT CATGAATGTA T                                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38406315	NES09660076	PERLEGEN	MM_PANEL2	f	SNP	C		C	C		T	C	C	T	C	C	C
ss46512755	mCV24806060	ABI	CRAMUS_MOUSE	r	SNP		G			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29079083					SNP	C	C	C	C	T	T	?	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406315	NES09660076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103861616 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	within coordinates
Rr6331	regulatory region 6331	652 bp distal