rs29079090 SNP Detail

Summary

• ID
  rs29079090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103860522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGAGGAGG AGTCATGCAG TATTCAGGTG AGGTTCCTGA
  CCCCGTCCCA TGCCAGTGTC TTTCTGAAAC TCATACCAGA GAGCCCGAGC AGCTACAGAG
  Y
  TCCTCTGTCA TCCTCTGGAC TTCTCCATCG TGTCTTATGC ATCCCTTTAT TTTGATGCCC
  AGATAAGTGT CCAGGCCCCT TGTCCTTGTC CCGTCACCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss38406324	NES09660058	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs29079090					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406324	NES09660058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103860522 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	within coordinates
Rr6331	regulatory region 6331	120 bp proximal