rs29079091 SNP Detail

Summary

• ID
  rs29079091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103860295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAGCTG TATTCTGCCA CAGAGGGCTT TGTGGCTATT
  GGCAGGCCGC TTTCTCTCAG TGGAGAACGA GGTGCACGTC CGCAGAGTTC TCAATTGGAG
  Y
  CTTGGTGGGA GCCAGTGCTC TAGGTGCTCT GGAACTCAGA AGCCCACTGG CTTCTTTCCC
  AGCATGCATT TAACTCCAGT CTCCTCATTC CCGAGCCTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38406325	NES09660056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29079091					SNP	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406325	NES09660056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103860295 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	87 bp upstream
Rr6331	regulatory region 6331	347 bp proximal