rs29079701 SNP Detail

Summary

• ID
  rs29079701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103527376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTTCCG GCCTCTTTGT
  CTGTCTTAAA CATGACCAAT CCTCTACTGT GCCAGGCAGG TACACACCCC TATGCCATCT
  GCTCAGTTCC CGACCACGTG GTAAATGTAT AACCCAGGAA TGGTTACTGC CTGTGGTTAT
  TAACACCCCG ACAGCCCAAG CTCACAAAAC TAAAGCAATT TCAAGGGAAA TGATGTGCTC
  Y
  GCCAGCCCTC TGACTCAACA GCATTTGCTC CTGCAGTTTG CCATTTTGTT TACTGATTGG
  GAGTTCAGCT TTACCTGGTT GCCAGAAAGT TTATGATTCC ACTCTTATCA AGACAGTTTT
  ACTGAAAACT TACAGAATGT AGTTAACAGC AAAGGTAACC TAAGAACAAG TTGGATCCTC
  CTAATCCCAC AAATCAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38406643	NES09664308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29079701					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406643	NES09664308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103527376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	506 bp distal
Rr693080	regulatory region 693080	942 bp distal
Tssr161735	transcription start site region 161735	912 bp downstream
Tssr161736	transcription start site region 161736	613 bp downstream
Tssr161737	transcription start site region 161737	577 bp downstream
Uprt	uracil phosphoribosyltransferase	within coordinates