rs29079702 SNP Detail

Summary

• ID
  rs29079702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103526695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCATCCT TTTCTTCTTG
  CCCTTTATCC CTAGGGTTTG ATAGCAGCGG GGATAGCTCG GGGGCCCCGT GTATGGCCTC
  GGAGTTACAG CGTCCGGACT CCATGCCCTG TCACAATCGG CAAGTAAACT CTACTTCTAG
  CCCAAGTCCC GAGCATCTGC TAGCCGAGGA CCGGGTCCTG GATCATGCAG AGGAAAATAA
  Y
  GCTGCTATGG CTAAGCTGAC TCTCCTCCCT GGGCACGCCC ATTCTAGCGT GCTTTCGGAG
  CGGGACTCTC CGGCCTGCTG CAGCACTAAT CTTCACTCTG AGAACCACAG TGACAGTAGT
  GACAGTGGCA ACTACGATGC ACCTGTCGGC GGCGACTCCC TGCTAGGGGA CTGTGAACTC
  TCCCGACAGA TTGGGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38406644	NES09664307	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29079702					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406644	NES09664307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103526695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	within coordinates
Rr693080	regulatory region 693080	261 bp distal
Tssr161735	transcription start site region 161735	231 bp downstream
Tssr161736	transcription start site region 161736	32 bp upstream
Tssr161737	transcription start site region 161737	73 bp upstream
Uprt	uracil phosphoribosyltransferase	within coordinates