rs29079703 SNP Detail

Summary

• ID
  rs29079703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103526160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACACACGA AATGACATCT TGTAGAAGAG TCTAGAAAGG CCAGCCTGCT
  AGCTGTTCTT ACTTTGCTTC TTCTGTTACA CAGATAAGCC ATTAGCTTGA AGATGCAGCC
  AACTACCCAA GTATGTTTTC TTTGCCAAGA CAGAAAGTTA GAAAACAGTG CCTTACATGT
  R
  TAATCCACCC GTATCTTTTC TTGGCTCTAC CAAAGTTCTG ATTGCAAGAA GTCCTAGGGG
  TTTTCTGAGG ACTCAGCAAC CAGGGATATC TCTGGTTTAG CCACCTCTGC CAAGCAACTG
  TGATAATCTC TCAAGCAGGA AAGACTTAAA AGAGTTAACA AACCAGCATG CTGTAGACTG
  GCAGAGAGAT GGGCCAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38406645	NES09664306	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29079703					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38406645	NES09664306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103526160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	184 bp proximal
Rr693080	regulatory region 693080	within coordinates
Tssr161735	transcription start site region 161735	220 bp upstream
Tssr161736	transcription start site region 161736	567 bp upstream
Tssr161737	transcription start site region 161737	608 bp upstream
Uprt	uracil phosphoribosyltransferase	264 bp upstream