rs29080186 SNP Detail

Summary

• ID
  rs29080186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100464953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTGACC TTTCCTCCTT
  CCCATAGAAA GCCTGCCCAC CCTTGTCCTT GGGAATTTTA CCCATATTTT AACAGAAGCC
  TTGTTTTCCC TTCCGCCTAC CCCCCCTCAG CCTTGAGGTT GTCTTTGCTC TCTCCTACAT
  CAGAGATAAA TGTAATTTTT TTCCGGTGTA GATTGCCTAA ACCCGGCTTT CTGTGTCTTA
  R
  TCAGTATGCT CTGTAGCCAT CTCCCACTTT CTGCCTCTTT CTGTTTCTAC TGTTTCTTTG
  TATTTTCTGT TTCTTCCTGG CCCCCTGGCT GTTCTGGGGG TAGAATGTCT AATTTGGTGG
  CAGATCACGA ATTTTCAAGT GGAGTGAAGA GCATCTAAGA GGGAGGGGTG ACTTCTGCTC
  TGGCACGGTG GTCTGGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38409729	NES09668243	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29080186					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409729	NES09668243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100464953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22868	CpG island 22868	1914 bp distal
Cpgi22869	CpG island 22869	1060 bp distal
Rr692835	regulatory region 692835	1642 bp distal
Rr692836	regulatory region 692836	223 bp distal
Tssr163885	transcription start site region 163885	1560 bp upstream
Tssr163886	transcription start site region 163886	1488 bp upstream
Tssr163887	transcription start site region 163887	1122 bp upstream
Tssr163888	transcription start site region 163888	983 bp upstream
Tssr163889	transcription start site region 163889	189 bp upstream
Zmym3	zinc finger, MYM-type 3	498 bp upstream