rs29080617 SNP Detail

Summary

• ID
  rs29080617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100093656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTAGGA ATCACACTTG
  AGTTAGGCTC AGCAAGAGGT ACCTTTCTTT TTCTTCTGAG CCATCTCACT CACCCTAAAA
  CCCTTACAGG AAAATAAAGC AACAGGTGCT AACAAAATTG TGCATCCATG AGGACCTGAG
  CTTGGACCAT CAAATACCCA CATATCAAAT CCCTACAGAC AGTGTTAAGA TATAAAGTTG
  Y
  ACATTGCAGC AGCTTCATAT GACTAACTGT AGAAAAGTAA AATGGACATC ACTTCATATG
  GTTAGTTCGG TATATTTTTA TATCTAGCAG ACTGACATAT CTGCACACAC TGAGAAGGCA
  GAAACAGAAG GTTCAGTATG GCTTGAAGGC CAGTCAGTGA GCTGGTTCAG TGTGAGACCC
  TGTCTGGAAA AATAAGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38410019	NES09660279	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29080617					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38410019	NES09660279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100093656 () rs orientation: forward

Symbol	Name	Function Class
Rr2284	regulatory region 2284	1256 bp distal
Tex11	testis expressed gene 11	within coordinates