rs29081101 SNP Detail

Summary

• ID
  rs29081101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100430250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCTTTC CCAAGCCTTT
  CTCCCTGTGT GTAAACATGG GCTGGCCTAG CACCTCTCCC AGCTCCCTCC TACACTTGTC
  TGTGGTTCTA GAGGACCCCT CCCCAGCTCT ACAGAGCCTT CCCCAACTGA CACTACCCAC
  ACAAAGTGCC TCAGGGTCCA AGTCCCACCC TCCAGCAAGT TTTCCCTCTC AGCCATCCCA
  Y
  CTCTGAGCTG GACAGAGCAC TATCCCCACC CCATCTCAGA GTCTGTGGAG GAAATGTACC
  AGAAATGAAG AAAATCAGGT GTGTTTCATC AGAATCGTTT TCCCGCTGGA ATAACTTTTT
  TTCCTTTCTG AGAGAAAGCA TAAAATAAAA GAGAGAAAAC AAGTTGGGTG TAATGGTACC
  TGAGTTAAAA GCCTAAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38409755	NES09668818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29081101					SNP	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409755	NES09668818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100430250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	1599 bp distal
Gjb1	gap junction protein, beta 1	1015 bp downstream
Rr692834	regulatory region 692834	122 bp distal
Tssr161665	transcription start site region 161665	1771 bp downstream
Tssr163884	transcription start site region 163884	1963 bp upstream