rs29081585 SNP Detail

Summary

• ID
  rs29081585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99774260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC TCACACAGAG TGAAAAAGCG
  R
  CACCGTTCCT TTGTACAGGA CAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38410337	NES09664684	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	G	G		G	A	G	G		G
ss134256557	ENSMUSSNP6368979	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325907526	CHEV_X_97925993	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29081585					SNP	A	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38410337	NES09664684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99774260 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Gm52438	predicted gene, 52438	1493 bp upstream
Rr692772	regulatory region 692772	458 bp distal
Rr692773	regulatory region 692773	555 bp distal
Rr692774	regulatory region 692774	within coordinates
Tssr161618	transcription start site region 161618	831 bp downstream
Tssr161619	transcription start site region 161619	808 bp downstream
Tssr161620	transcription start site region 161620	691 bp downstream
Tssr161621	transcription start site region 161621	660 bp downstream
Tssr161622	transcription start site region 161622	532 bp downstream
Tssr161623	transcription start site region 161623	513 bp downstream
Tssr161624	transcription start site region 161624	487 bp downstream
Tssr161625	transcription start site region 161625	465 bp downstream