rs29081586 SNP Detail

Summary

• ID
  rs29081586
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99773099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCACTT CATCAGCCCC
  AATCCAAGAG CTGTCCATCA ACACAGCTCC CATGCAATCC TGTACTTTTT ATACTAAGCT
  GACCACAGCT TGCTAGGCCA CCTGCTTCTT TTGTACATGT TCATCTTCCA AAAGCCTGGT
  ACCCTAATAC ACTATACACT CCTGAAGCCA TTCAGTGCTT GATAAACAAG ACAGCGAGCC
  W
  GATATCCTGA ATGAGCACCT GATGGGTGGT GCGGTGAGGG CTATTGAATA CATCCACAGG
  GACTCCTGGT CCAGAAATGG GGCATCTTAC TGCCTAGAGT TCATAAAGTC ACTTCAATAG
  CATCACATCG ATGGAACTTG CAGAAGTATA AATAGCCCAA GAGGAAAGGG AAGCTAATGA
  TTGGAAGTTG TACTCCTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38410338	NES09664683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29081586					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38410338	NES09664683	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99773099 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	380 bp upstream
Gm52438	predicted gene, 52438	332 bp upstream
Rr692772	regulatory region 692772	within coordinates
Rr692773	regulatory region 692773	568 bp proximal
Rr692774	regulatory region 692774	704 bp proximal
Tssr161618	transcription start site region 161618	325 bp upstream
Tssr161619	transcription start site region 161619	343 bp upstream
Tssr161620	transcription start site region 161620	424 bp upstream
Tssr161621	transcription start site region 161621	487 bp upstream
Tssr161622	transcription start site region 161622	626 bp upstream
Tssr161623	transcription start site region 161623	633 bp upstream
Tssr161624	transcription start site region 161624	663 bp upstream
Tssr161625	transcription start site region 161625	685 bp upstream