rs29081588 SNP Detail

Summary

• ID
  rs29081588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TGCCAGCAAG CAGCCTTGCT
  Y
  CTCTTTGCAT TTTAATTCTG AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38410340	NES09664681	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	C	T	T		T	C	T	T		T
ss46521889	mCV23831018	ABI	CRAMUS_MOUSE	f	SNP	C	T	T					C		C
ss134256548	ENSMUSSNP1000852	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss325907523	CHEV_X_97924410	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29081588					SNP	C	T	T	T	T	C	T	C	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38410340	NES09664681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772677 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	802 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1799 bp downstream
Tssr161618	transcription start site region 161618	747 bp upstream
Tssr161619	transcription start site region 161619	765 bp upstream
Tssr161620	transcription start site region 161620	846 bp upstream
Tssr161621	transcription start site region 161621	909 bp upstream
Tssr161622	transcription start site region 161622	1048 bp upstream
Tssr161623	transcription start site region 161623	1055 bp upstream
Tssr161624	transcription start site region 161624	1085 bp upstream
Tssr161625	transcription start site region 161625	1107 bp upstream