rs29081589 SNP Detail

Summary

• ID
  rs29081589
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT TTGAAACCTT TTGGGAGTTT
  K
  CAAGCCTTGA GGCTCATCCA TGCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38410341	NES09664680	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T		G	G	T	T		G	G	T	G		T
ss46517682	mCV23831019	ABI	CRAMUS_MOUSE	f	SNP		T					G		G
ss134256545	ENSMUSSNP3729340	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
ss325907522	CHEV_X_97924191	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29081589					SNP	G	T	T	T	G	T	G	G	G	T	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38410341	NES09664680	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772458 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1021 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1580 bp downstream
Rr692772	regulatory region 692772	600 bp proximal
Rr692773	regulatory region 692773	1209 bp proximal
Rr692774	regulatory region 692774	1345 bp proximal
Tssr161618	transcription start site region 161618	966 bp upstream
Tssr161619	transcription start site region 161619	984 bp upstream
Tssr161620	transcription start site region 161620	1065 bp upstream
Tssr161621	transcription start site region 161621	1128 bp upstream
Tssr161622	transcription start site region 161622	1267 bp upstream
Tssr161623	transcription start site region 161623	1274 bp upstream
Tssr161624	transcription start site region 161624	1304 bp upstream
Tssr161625	transcription start site region 161625	1326 bp upstream