rs29081611 SNP Detail

Summary

• ID
  rs29081611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101042434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAAGGA AAAGCACTCC
  TCTGGAAGGA ATAGAAACAG AGAAACCTTC ATTGAGGCTG AAAGCAACCC CCCTGCTTCA
  GGGTTGAGAA GTATGACTGT AGCTCACTGG GACAGAATCT CTCAGAAAAG GGCTGAGTAA
  GCTTGCACAT GAGCCCAAGG ATAGGCTACT GGTAGACTGC TGGAGGACAC AGTCGAACTG
  Y
  GCCTTGGAAT TCAGGGTTTC CAATAAAACT TCGATCTGAA AGACCCAATA CCAAACTGAA
  GTATGTGCAG GTGGGGCCAG CTGTGTGACA AAAACAAAAA CAAAAACAAA AACTAGGCTT
  AGAGTTAGCT AACTTGGGTC CATGACACAA CCATGCAATT TTTTAGTTCA GTCTCTTTAC
  CCTGGTTTAT TTCTCCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38409163	NES09668576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29081611					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409163	NES09668576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101042434 () rs orientation: forward

Symbol	Name	Function Class
Nhsl2	NHS like 2	within coordinates