rs29081612 SNP Detail

Summary

• ID
  rs29081612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101041734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGACTTG CTGATCCATT
  TCACTAACTC TAGACGTTTT TATGTACAAT GAATATATAC ACCAACGAGT GCACACATTG
  ACTAGTGATC ACAAAGTATA CATCCTATAC TCACTCTCGT TTCCCTCGCT TGAGAAGCTG
  AACAGAAGCA GGACCAGCAC TGCAGAGCCC TCCTACCTTT AGGCATATTG CAGATCATCC
  Y
  TCCAATACCT TTGTGAGTAG TTTAACCCAA TTTACAGATA CACATTATTT TTTCCTTGAA
  CCAGCTAATT TAATTTTGCC TCAGATATCC AACAAATTAG ACTTTTTGAC ACACTCAATT
  TTTCTTCTTG TTATGAGATC CTATTATATA TACTAGCATA CGAGTATAAC TACGAAATTT
  ACAAAGATCA TGCATGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38409164	NES09668575	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T		C	T	T	C		C
ss325907599	CHEV_X_99193467	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29081612					SNP	T	T	C	T	T	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409164	NES09668575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101041734 () rs orientation: forward

Symbol	Name	Function Class
Nhsl2	NHS like 2	within coordinates