rs29081616 SNP Detail

Summary

• ID
  rs29081616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102623986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTTCC TTCTTGTCCT
  AAAGCAACAC ATATACTTGT ATCACCCGTA TCCATAACAT TTCCTATTAC ACTCCTACGA
  TTTCCATTTG CTCCTTAATA GATGACAAGC CAAGCTATTA AAATGCTGGA GGGGGTCATG
  CAGTTTCCTT TAGTTTGAGT CAGCCCACCA GCCTACAGAA GGAAAGGAGA CTGATTAAAA
  Y
  GTTCTAATGC TTACACATAA AACTCAGCAG GGCCTACTCA GTGAACCTTT AATGTAAGGA
  TCTGCACTCC TTATCTCAAA CAACTTACCC TTGTCTTAAG ATTCTGGGGG TAGCAGCAGG
  CATAAAGGAT ACAGATTTTC TAAAGATGCG GCACACCTTC CAAAGAGACA GCAAATCTAA
  TGCCAAGCAG ACATTTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38407658	NES09660223	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29081616					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38407658	NES09660223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102623986 () rs orientation: forward

Symbol	Name	Function Class
Ftx	Ftx transcript, Xist regulator, non-protein coding	within coordinates
Rr6306	regulatory region 6306	473 bp distal