rs29081645 SNP Detail

Summary

• ID
  rs29081645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100426749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTAGTC TCACCAGGTG
  CCCACCTGCT AAGCCCCTGG AGAGGGCCCC TTTCCTACAG CCTACGAAGA GATGAAGAGA
  TACTCATAGC TCGCTCGATT TGGACCGTGC TCACAGCTAG ACAGCTTCCT TGATTTTTGT
  GTTGTAAAAT ACAAAGTGAC ATCAAATTAG CTGTCTTTTC TTTTTTTTTA ATGGCTAGCT
  Y
  TTTCTTCATC GGCAAAAGCA CAAGAAGTCT GCTGCTGTAA GAGTCAGGTC TGCTGTTTCA
  GACTCTTTTG TGCTTCGTCA TTTTTAGCCA TGGTGACTTT GAGTGGATAA CAGGATTGTT
  AAATGGCTCA AAAGAAAGAA TGCCTGGGGA AATGATTAGT AAAGTTCCTA GCTTGATAAA
  CTCGGTACCC TGGTTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38409759	NES09668901	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29081645					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409759	NES09668901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100426749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	1522 bp proximal
Gjb1	gap junction protein, beta 1	within coordinates
Tssr161658	transcription start site region 161658	583 bp upstream
Tssr161659	transcription start site region 161659	622 bp upstream
Tssr161660	transcription start site region 161660	638 bp upstream
Tssr161661	transcription start site region 161661	1153 bp upstream
Tssr161662	transcription start site region 161662	1300 bp upstream
Tssr161663	transcription start site region 161663	1347 bp upstream
Tssr161664	transcription start site region 161664	1487 bp upstream
Tssr161665	transcription start site region 161665	1717 bp upstream
Tssr163884	transcription start site region 163884	1501 bp downstream