rs29082012 SNP Detail

Summary

• ID
  rs29082012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103002268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGCAGA GGCACAAGGA
  CTGCCACAAA TCTAAAGCCA GCCTGGTCCA CAGAGTTCCA GGCCAGCTGT GAGCACACAG
  CAAGATCTTA CCTCAAGAAA GGTAACTCAA TGCTAAAAAA TTTAAAGGGT GGCTATTGAT
  TGAGCTCACA ACTGTTTTTA TTAAACTGAA CTTAAAAATA TTCTTTCCCC AGATCTTGCA
  Y
  TTTAACTTCC CATGATACAT CAACATACAC TTAAAAAAAT TTTTTAGAAG AACCATTTAC
  TAGTTAACTC AATAACAACA CTGTTACTGT GCATTAGACA TATTGAACTG TACTAAAGGG
  GAAAAAGAAA CACCTTCACA TGTGCCTTCT CCACCTCGTT ACACAGGTAT AGAAAGAATA
  CTTCCAGAGA GTGAAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38407194	NES09671598	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29082012					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38407194	NES09671598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103002268 () rs orientation: forward

Symbol	Name	Function Class
Rlim	ring finger protein, LIM domain interacting	within coordinates
Rr2469	regulatory region 2469	1068 bp distal
Rr2470	regulatory region 2470	333 bp proximal
Tssr163970	transcription start site region 163970	358 bp upstream