rs29082146 SNP Detail

Summary

• ID
  rs29082146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102678581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCAGCCC TGGATTCTGC
  ATTTGCATCC CTTCAAATCA TCTGGAATTT TATTTCTCCT GTGCTCAAGA GAGTCAGAGT
  TGAACAGGAA AAAAAGATCT TACACTTTAT CAAGGCTCAT TCAAGGTTAG ACTTCTTTAT
  TTCTTCTCCT AGGTAATTCT TTCTACTTAG AAGAAGATCA TCCTTATTTT GTCTCATCAG
  Y
  ATTCCTATGC CAGAAGACAG AAACACAGGT TCACAAGCAT GTTATTTAAC CTGCACATTG
  CTTTACAGAG TTTCTGAATT AGATGCCCAC ATTGACAAAG GGGACAGCTG AGGAGGCAGA
  GTGGTGGGGA GTGCTGCCTT AGCACTCCTG GGGCCCTAGG TTTAGACCCT AGGTTTTAAC
  ATTCCTGAGG CCCTGGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38407582	NES09658769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29082146					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38407582	NES09658769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102678581 () rs orientation: forward

Symbol	Name	Function Class
Rr6311	regulatory region 6311	745 bp distal