rs29082192 SNP Detail

Summary

• ID
  rs29082192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100738701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGATGT TTCTTTTGTA
  TGGTGTGGCA AAAAAAAAGA AAATAATAAT TGTGAAGTAT ATAGGTGTCT GCCAGGGGAA
  GAACAGTGGA AAAAGCACTA GCTTTTTCTT GTGTTTGGAA CGGACACTGG GAAGTTTAAA
  GTAACCAACT TTTTTTTTTC TCCAGGGTCT GACAGTTCTT GAGGCCAGCA CCATAGTTCT
  K
  TGTCGCTAGA TGTTTTTCCG TTGCTCCTCC TTTCTCTCAT CTAGGGGTCT AAATAGTCCT
  TTTCTGCAAG TGCTTACGGT AGACTAGGTA GACGAACTTT GTAAACATTT GGGAGTTCAA
  GCAAGGTAGG TCACAAGGCT TGGTGGTGCA TGCCTTTAAT CCCAGCACTT GGGAGGCAGA
  GGCAGGCAGA TTTCTGAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38409488	NES09663618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29082192					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38409488	NES09663618	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100738701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22873	CpG island 22873	1745 bp proximal
Gcna	germ cell nuclear acidic protein	741 bp upstream
Gm50476	predicted gene, 50476	200 bp upstream
Tssr161700	transcription start site region 161700	738 bp upstream